In this study the antifungal activity of five essential oils (Canarium luzonicum, Cymbopogon martinii, Ledum palustre subsp. groenlandicum, Matricaria chamomilla, and Ocimum tenuiflorum) against both clinical (Penicillium chrysogenum, Aspergillus tubingensis, A. minutus) and plant pathogenic filamentous fungi (Verticillium spp., Fusarium oxysporum, Sclerotina sclerotiorum) were evaluated. Minimum Inhibitory Concentrations (MIC) were determined following CLSI M38-A2 recommendations. All tested essential oils showed antifungal activity. C. martini and O. tenuiflorum essential oils were very effective with MIC range values similar or lower than those of terbinafine. Sclerotinia sclerotiorum (PeruMicA 26) and Verticillium spp. (PeruMicA 24) were the most sensitive strains to essential oils, while A. tubingensis (PeruMicA 21) showed the lowest sensitivity to the essential oils.